species:   Scscl
pid:       PID1529
parent:    Ssc-milR-5
paralog:   
locus:     NC_035155.1:14916-15006
matures:   ['UAUUUGCUUAAGGUAUAGUCAG', 'GGCCAACCUAAGGGAAUAAA']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NC_035155.1:14916-15006

7 out of bounds
15 alignments
13 proper strand
10 stranded perfect matches

           ************************              *****************************             
GGACAAAAAUUAUUUGCUUAAGGUAUAGUCAGGCAUAACCAAAAAGUUAUGGGAAUACCCUGGCCAACCUAAGGGAAUAAAUAAAAUUCCU
(((......((((((.((((.(((...((((((((((((......)))))).......))))))..))))))).)))))).......))).
----------UAUUUGCUUAAGGUAUAGUCAG----------------------------------------------------------- l=22 a=1 c
-------------------------------------------------------------GGCCAACCUAAGGGAAUAAA---------- l=20 a=0 c*
-------------UUGCUUAAGGUAUAGUCAGGCA-------------------------------------------------------- l=22 a=2 ma
---------------------------------------------------GGAAUACCCUGGCCAACCUAAGGGAAU------------- l=27 a=0 ma*

----------UAUUUGCUUAAGGUAUAGUCAG----------------------------------------------------------- l=22 a=1 (c)
-------------UUGCUUAAGGUAUAGUCAGGCA-------------------------------------------------------- l=22 a=2 (ma)
--------------UGCUUAAGGUAUAGUCAGGC--------------------------------------------------------- l=20 a=1 
--------------UGCUUAAGGUAUAGUCAGGCAUA------------------------------------------------------ l=23 a=1 
-----------------UUAAGGUAUAGUCAGGCAUAA----------------------------------------------------- l=21 a=1 
------------------UAAGGUAUAGUCAGGCAaA------------------------------------------------------ l=19 a=1 
------------------UAAGGUAUAGUCAGGCAUAACC--------------------------------------------------- l=22 a=1 
------------------UAAGGUAUAGUCAGGCAUAACCA-------------------------------------------------- l=23 a=1 
----------------------GUAUAGUCAGGCAUAACCAA------------------------------------------------- l=20 a=1 
-----------------------UAUAGUCAGGCAUAACCAAAAu---------------------------------------------- l=22 a=1 
------------------------------------------------------------UGGCCAACCUAAGGGAAc------------- l=18 a=1 
------------------------------------------------------------UGGCCAACCUAAGGGAAUAA----------- l=20 a=1 

mb-00011
ax-1001011
ku-01
ss-101111101000
fn-111
